pyCirclizely: Circular visualization in Python with plotly

Overview

pyCirclizely is a reimagining of pyCirclize for interactive circular visualizations in python, enabling interactive and publication-ready circular visualizations such as Circos plots, Chord diagrams, and Phylogenetic trees. It is the spiritual successor to the original pyCirclize library, now reimagined with modern, browser-based interactivity.

Why pyCirclizely?

• Interactive plots using Plotly
• Jupyter-ready: explore your data live
• Supports Circos plots, Chord diagrams, Radar charts, Phylogenetic trees, and more
• Easy installation via pip or conda

Installation

Python 3.10 or later is required for installation.

Install PyPI package:

pip install pycirclizely

Install conda-forge package:

conda install -c conda-forge pycirclizely

API Usage

API usage is described in each of the following sections.

• Getting Started
• Plot API Example
• Chord Diagram
• Radar Chart
• Circos Plot (Prokaryotes)
• Circos Plot (Eukaryotes)
• Comparative Genomics
• Phylogenetic Tree
• Plot Tips